After much cheching and head scratching I figgured this out. I did not have the MCR (master control relay) input tired to 24vdc. After running the problem back to the outputs on the PLC, I started looking for reasons.
I think it would be good of TRi-PLC to mention in the Outputs section of your docunmentation that the MCR input must be tied to 12-24vdc to enable the outputs. If not enabled, outputs can function in a random manner depending on extrenal circuts. I was able to toggle one bit on and off, but any more would cause problems and strange wave forms.
Hope this helps someone else.